Summary

Citation Summary

2018

Adams, Richard H., Drew R. Schield, Daren C. Card, and Todd A. Castoe. Assessing the Impacts of Positive Selection on Coalescent-Based Species Tree Estimation and Species Delimitation. Systematic Biology 67 (6): 1076–90. https://doi.org/10.1093/sysbio/syy034.

Schield, Drew R., Richard H. Adams, Daren C. Card, Andrew B. Corbin, Tereza Jezkova, Nicole R. Hales, Jesse M. Meik, Blair W. Perry, Carol L. Spencer, Lydia L. Smith, Gustavo Campillo García, Nassima M. Bouzid, Jason L. Strickland, Christopher L. Parkinson, Miguel Borja, Gamaliel Castañeda-Gaytán, Robert W. Bryson, Oscar A. Flores-Villela, Stephen P. Mackessy, and Todd A. Castoe. Cryptic Genetic Diversity, Population Structure, and Gene Flow in the Mojave Rattlesnake (Crotalus Scutulatus). Molecular Phylogenetics and Evolution 127 (October): 669–81. https://doi.org/10.1016/j.ympev.2018.06.013.

Card, Daren C., Blair W. Perry, Richard H. Adams, Drew R. Schield, Acacia S. Young, Audra L. Andrew, Tereza Jezkova, Giulia I.M. Pasquesi, Nicole R. Hales, Matthew R. Walsh, Michael R. Rochford, Frank J. Mazzotti, Kristen M. Hart, Margaret E. Hunter, and Todd A. Castoe. Novel Ecological and Climatic Conditions Drive Rapid Adaptation in Invasive Florida Burmese Pythons. Molecular Ecology 0 (0). https://doi.org/10.1111/mec.14885.

Perry, Blair W.†/Daren C. Card† [† authors contributed equally], Joel W. McGlothlin, Giulia I. M. Pasquesi, Richard H. Adams, Drew R. Schield, Nicole R. Hales, Andrew B. Corbin, Jeffery P. Demuth, Federico G. Hoffmann, Michael W. Vandewege, Ryan K. Schott, Nihar Bhattacharyya, Belinda S. W. Chang, Nicholas R. Casewell, Gareth Whiteley, Jacobo Reyes-Velasco, Stephen P. Mackessy, Tony Gamble, Kenneth B. Storey, Kyle K. Biggar, Courtney N. Passow, Chih-Horng Kuo, Suzanne E. McGaugh, Anne M. Bronikowski, A. P. Jason de Koning, Scott V. Edwards, Michael E. Pfrender, Patrick Minx, Edmund D. Brodie, Edmund D. Brodie, Wesley C. Warren, and Todd A. Castoe. Molecular Adaptations for Sensing and Securing Prey and Insight into Amniote Genome Diversity from the Garter Snake Genome. Genome Biology and Evolution 10 (8): 2110–29. https://doi.org/10.1093/gbe/evy157.

Pasquesi, Giulia I. M., Richard H. Adams, Daren C. Card, Drew R. Schield, Andrew B. Corbin, Blair W. Perry, Jacobo Reyes-Velasco, Robert P. Ruggiero, Michael W. Vandewege, Jonathan A. Shortt, and Todd A. Castoe. Squamate Reptiles Challenge Paradigms of Genomic Repeat Element Evolution Set by Birds and Mammals. Nature Communications 9 (1): 2774. https://doi.org/10.1038/s41467-018-05279-1.

Schott, Ryan K., Alexander Van Nynatten, Daren C. Card, Todd A. Castoe, and Belinda S. W. Chang. Shifts in Selective Pressures on Snake Phototransduction Genes Associated with Photoreceptor Transmutation and Dim-Light Ancestry. Molecular Biology and Evolution 35 (6): 1376–89. https://doi.org/10.1093/molbev/msy025.

Card, Daren C., Drew R. Schield, and Todd A. Castoe. Plasticity and Local Adaptation Explain Lizard Cold Tolerance. Molecular Ecology 27 (9): 2173–5. https://doi.org/10.1111/mec.14575.

Adams, Richard H., Drew R. Schield, Daren C. Card, Andrew Corbin, and Todd A. Castoe. ThetaMater: Bayesian Estimation of Population Size Parameter θ from Genomic Data. Bioinformatics 34 (6): 1072–3. https://doi.org/10.1093/bioinformatics/btx733.

2017

Hales, Nicole R., Drew R. Schield, Audra L. Andrew, Daren C. Card, Matthew R. Walsh, and Todd A. Castoe. Contrasting Gene Expression Programs Correspond with Predator-Induced Phenotypic Plasticity Within and Across Generations in Daphnia. Molecular Ecology 26 (19): 5003–15. https://doi.org/10.1111/mec.14213.

Gamble, Tony, Todd A. Castoe, Stuart V. Nielsen, Jaison L. Banks, Daren C. Card, Drew R. Schield, Gordon W. Schuett, and Warren Booth. The Discovery of XY Sex Chromosomes in a Boa and Python. Current Biology 27 (14): 2148–2153.e4. https://doi.org/10.1016/j.cub.2017.06.010.

Lotterhos, Katie E., Daren C. Card, Sara M. Schaal, Liuyang Wang, Caitlin Collins, and Bob Verity. Composite Measures of Selection Can Improve the Signal-to-Noise Ratio in Genome Scans. Methods in Ecology and Evolution 8 (6): 717–27. https://doi.org/10.1111/2041-210X.12774.

Schield, Drew R., Richard H. Adams, Daren C. Card, Blair W. Perry, Giulia M. Pasquesi, Tereza Jezkova, Daniel M. Portik, Audra L. Andrew, Carol L. Spencer, Elda E. Sanchez, Matthew K. Fujita, Stephen P. Mackessy, and Todd A. Castoe. Insight into the Roles of Selection in Speciation from Genomic Patterns of Divergence and Introgression in Secondary Contact in Venomous Rattlesnakes. Ecology and Evolution 7 (11): 3951–66. https://doi.org/10.1002/ece3.2996.

Adams, Richard H., Drew R. Schield, Daren C. Card, Heath Blackmon, and Todd A. Castoe. GppFst: Genomic Posterior Predictive Simulations of FST and dXY for Identifying Outlier Loci from Population Genomic Data. Bioinformatics 33 (9): 1414–5. https://doi.org/10.1093/bioinformatics/btw795.

Andrew, Audra L., Blair W. Perry, Daren C. Card, Drew R. Schield, Robert P. Ruggiero, Suzanne E. McGaugh, Amit Choudhary, Stephen M. Secor, and Todd A. Castoe. Growth and Stress Response Mechanisms Underlying Post-Feeding Regenerative Organ Growth in the Burmese Python. BMC Genomics 18 (May): 338. https://doi.org/10.1186/s12864-017-3743-1.

Schott, Ryan K., Bhawandeep Panesar, Daren C. Card, Matthew Preston, Todd A. Castoe, and Belinda S. W. Chang. Targeted Capture of Complete Coding Regions Across Divergent Species. Genome Biology and Evolution 9 (2): 398–414. https://doi.org/10.1093/gbe/evx005.

Cox, Robert M., Christian L. Cox, Joel W. McGlothlin, Daren C. Card, Audra L. Andrew, and Todd A. Castoe. Hormonally Mediated Increases in Sex-Biased Gene Expression Accompany the Breakdown of Between-Sex Genetic Correlations in a Sexually Dimorphic Lizard. The American Naturalist 189 (3): 315–32. https://doi.org/10.1086/690105.

Shortt, Jonathan A., Daren C. Card, Drew R. Schield, Yang Liu, Bo Zhong, Todd A. Castoe, Elizabeth J. Carlton, and David D. Pollock. Whole Genome Amplification and Reduced-Representation Genome Sequencing of Schistosoma Japonicum Miracidia. PLOS Neglected Tropical Diseases 11 (1): e0005292. https://doi.org/10.1371/journal.pntd.0005292.

Verity, Robert, Caitlin Collins, Daren C. Card, Sara M. Schaal, Liuyang Wang, and Katie E. Lotterhos. Minotaur: A Platform for the Analysis and Visualization of Multivariate Results from Genome Scans with R Shiny. Molecular Ecology Resources 17 (1): 33–43. https://doi.org/10.1111/1755-0998.12579.

2016

Card, Daren C., Drew R. Schield, Richard H. Adams, Andrew B. Corbin, Blair W. Perry, Audra L. Andrew, Giulia I. M. Pasquesi, Eric N. Smith, Tereza Jezkova, Scott M. Boback, Warren Booth, and Todd A. Castoe. Phylogeographic and Population Genetic Analyses Reveal Multiple Species of Boa and Independent Origins of Insular Dwarfism. Molecular Phylogenetics and Evolution 102 (September): 104–16. https://doi.org/10.1016/j.ympev.2016.05.034.

Streicher, Jeffrey W., Jay P. McEntee, Laura C. Drzich, Daren C. Card, Drew R. Schield, Utpal Smart, Christopher L. Parkinson, Tereza Jezkova, Eric N. Smith, and Todd A. Castoe. Genetic Surfing, Not Allopatric Divergence, Explains Spatial Sorting of Mitochondrial Haplotypes in Venomous Coralsnakes. Evolution 70 (7): 1435–49. https://doi.org/10.1111/evo.12967.

Adams, Richard H., Heath Blackmon, Jacobo Reyes-Velasco, Drew R. Schield, Daren C. Card, Audra L. Andrew, Nyimah Waynewood, and Todd A. Castoe. Microsatellite Landscape Evolutionary Dynamics Across 450 Million Years of Vertebrate Genome Evolution. Genome 59 (5): 295–310. https://doi.org/10.1139/gen-2015-0124.

Schield, Drew R., Matthew R. Walsh, Daren C. Card, Audra L. Andrew, Richard H. Adams, and Todd A. Castoe. EpiRADseq: Scalable Analysis of Genomewide Patterns of Methylation Using Next-Generation Sequencing. Methods in Ecology and Evolution 7 (1): 60–69. https://doi.org/10.1111/2041-210X.12435.

2015

Andrew, Audra L., Daren C. Card, Robert P. Ruggiero, Drew R. Schield, Richard H. Adams, David D. Pollock, Stephen M. Secor, and Todd A. Castoe. Rapid Changes in Gene Expression Direct Rapid Shifts in Intestinal Form and Function in the Burmese Python After Feeding. Physiological Genomics 47 (5): 147–57. https://doi.org/10.1152/physiolgenomics.00131.2014.

Schield, Drew R., Daren C. Card, Richard H. Adams, Tereza Jezkova, Jacobo Reyes-Velasco, F. Nicole Proctor, Carol L. Spencer, Hans-Werner Herrmann, Stephen P. Mackessy, and Todd A. Castoe. Incipient Speciation with Biased Gene Flow Between Two Lineages of the Western Diamondback Rattlesnake (Crotalus Atrox). Molecular Phylogenetics and Evolution 83 (February): 213–23. https://doi.org/10.1016/j.ympev.2014.12.006.

Jezkova, Tereza, Brett R. Riddle, Daren C. Card, Drew R. Schield, Mallory E. Eckstut, and Todd A. Castoe. Genetic Consequences of Postglacial Range Expansion in Two Codistributed Rodents (Genus Dipodomys) Depend on Ecology and Genetic Locus. Molecular Ecology 24 (1): 83–97. https://doi.org/10.1111/mec.13012.

Reyes-Velasco, Jacobo, Daren C. Card, Audra L. Andrew, Kyle J. Shaney, Richard H. Adams, Drew R. Schield, Nicholas R. Casewell, Stephen P. Mackessy, and Todd A. Castoe. Expression of Venom Gene Homologs in Diverse Python Tissues Suggests a New Model for the Evolution of Snake Venom. Molecular Biology and Evolution 32 (1): 173–83. https://doi.org/10.1093/molbev/msu294.

2014

Card, Daren C., Drew R. Schield, Jacobo Reyes-Velasco, Matthew K. Fujita, Audra L. Andrew, Sara J. Oyler-McCance, Jennifer A. Fike, Diana F. Tomback, Robert P. Ruggiero, and Todd A. Castoe. Two Low Coverage Bird Genomes and a Comparison of Reference-Guided Versus de Novo Genome Assemblies. PLOS ONE 9 (9): e106649. https://doi.org/10.1371/journal.pone.0106649.

Gilbert, C., J. M. Meik, D. Dashevsky, D. C. Card, T. A. Castoe, and S. Schaack. Endogenous Hepadnaviruses, Bornaviruses and Circoviruses in Snakes. Proceedings of the Royal Society of London B: Biological Sciences 281 (1791): 20141122. https://doi.org/10.1098/rspb.2014.1122.

Shaney, Kyle J., Daren C. Card, Drew R. Schield, Robert P. Ruggiero, David D. Pollock, Stephen P. Mackessy, and Todd A. Castoe. Squamate Reptile Genomics and Evolution. In Toxinology, 1–18. Springer, Dordrecht. https://doi.org/10.1007/978-94-007-6649-5_34-2.

2013

Castoe, Todd A., A. P. Jason de Koning, Kathryn T. Hall, Daren C. Card, Drew R. Schield, Matthew K. Fujita, Robert P. Ruggiero, Jack F. Degner, Juan M. Daza, Wanjun Gu, Jacobo Reyes-Velasco, Kyle J. Shaney, Jill M. Castoe, Samuel E. Fox, Alex W. Poole, Daniel Polanco, Jason Dobry, Michael W. Vandewege, Qing Li, Ryan K. Schott, Aurélie Kapusta, Patrick Minx, Cédric Feschotte, Peter Uetz, David A. Ray, Federico G. Hoffmann, Robert Bogden, Eric N. Smith, Belinda S. W. Chang, Freek J. Vonk, Nicholas R. Casewell, Christiaan V. Henkel, Michael K. Richardson, Stephen P. Mackessy, Anne M. Bronikowski, Mark Yandell, Wesley C. Warren, Stephen M. Secor, and David D. Pollock. The Burmese Python Genome Reveals the Molecular Basis for Extreme Adaptation in Snakes. Proceedings of the National Academy of Sciences 110 (51): 20645–50. https://doi.org/10.1073/pnas.1314475110.

Last Updated: 2019-03-16